Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| crp/fnr family transcriptional regulator | DXC44_21375 | Not Available | Positive | 4966767 - 4967468 | 26605.4 |
| ccoq/fixq family cbb3-type cytochrome c oxidase assembly chaperone | DXC44_21380 | Not Available | Positive | 4967595 - 4967747 | 5511.84 |
| ferritin | DXC44_21385 | Not Available | Positive | 4967780 - 4968292 | 19740.4 |
| hypothetical protein | DXC44_21390 | Not Available | Positive | 4968415 - 4968756 | 13648.4 |
| dde transposase | DXC44_21395 | Not Available | Positive | 4968815 - 4969705 | 34844.1 |
| addiction module antidote protein, higa family | DXC44_21400 | Not Available | Negative | 4970222 - 4971337 | 43017.2 |
| plasmid maintenance system killer protein | DXC44_21405 | Not Available | Negative | 4971327 - 4971650 | 12512.0 |
| site-specific integrase | DXC44_21410 | Not Available | Positive | 4972238 - 4973461 | 46754.7 |
| hypothetical protein | DXC44_21415 | Not Available | Positive | 4973688 - 4974194 | 19501.4 |
| hypothetical protein | DXC44_21420 | Not Available | Positive | 4974547 - 4975788 | 46754.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

