Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent helicase | DXC44_21320 | Not Available | Positive | 4950799 - 4952118 | 49651.0 |
| phosphoserine aminotransferase | DXC44_21325 | Not Available | Positive | 4952373 - 4953443 | 39557.6 |
| 3-phosphoglycerate dehydrogenase | DXC44_21330 | Not Available | Positive | 4953551 - 4954471 | 33087.2 |
| duf1015 domain-containing protein | DXC44_21335 | Not Available | Positive | 4954580 - 4955827 | 47087.9 |
| abc transporter permease | DXC44_21345 | Not Available | Negative | 4957126 - 4958316 | 44418.7 |
| abc transporter permease | DXC44_21350 | Not Available | Negative | 4958300 - 4959472 | 43620.6 |
| biotin/lipoyl-binding protein | DXC44_21355 | Not Available | Negative | 4959533 - 4960528 | 36927.8 |
| tolc family protein | DXC44_21360 | Not Available | Negative | 4960546 - 4961979 | 53881.0 |
| hypothetical protein | DXC44_21365 | Not Available | Negative | 4962042 - 4964240 | 86162.9 |
| glutamine synthetase type iii | DXC44_21370 | Not Available | Positive | 4964416 - 4966605 | 82847.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

