Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DXC44_21215 | Not Available | Negative | 4916145 - 4919216 | 113393.0 |
| alpha-l-fucosidase | DXC44_21220 | Not Available | Negative | 4919307 - 4920953 | 62681.8 |
| arac family transcriptional regulator | DXC44_21225 | Not Available | Positive | 4921195 - 4922055 | 33567.5 |
| aldo/keto reductase | DXC44_21230 | Not Available | Positive | 4922173 - 4923105 | 34845.4 |
| amidohydrolase | DXC44_21235 | Not Available | Positive | 4923123 - 4924046 | 35621.2 |
| l-fucose:h+ symporter permease | DXC44_21240 | Not Available | Positive | 4924073 - 4925332 | 47261.1 |
| sorbitol dehydrogenase | DXC44_21245 | Not Available | Positive | 4925355 - 4926374 | 36708.0 |
| naat family transporter | DXC44_21250 | Not Available | Negative | 4926447 - 4927091 | 23867.2 |
| susd family outer membrane lipoprotein nanu | DXC44_21255 | Not Available | Negative | 4927228 - 4928817 | 60057.3 |
| tonb-dependent receptor | DXC44_21260 | Not Available | Negative | 4928833 - 4932153 | 122786.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

