Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXC44_01955 | Not Available | Negative | 491719 - 491946 | 8180.13 |
| aminoacyl-histidine dipeptidase | DXC44_01960 | Not Available | Positive | 492168 - 493625 | 53150.6 |
| endonuclease | DXC44_01965 | Not Available | Positive | 493631 - 494641 | 38255.8 |
| 23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmh | DXC44_01970 | Not Available | Negative | 494718 - 495191 | 18355.5 |
| carboxylating nicotinate-nucleotide diphosphorylase | DXC44_01975 | Not Available | Positive | 495272 - 496123 | 31273.2 |
| arac family transcriptional regulator | DXC44_01980 | Not Available | Negative | 496228 - 499047 | 107390.0 |
| tonb-dependent receptor | DXC44_01985 | Not Available | Positive | 499290 - 502328 | 110997.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_01990 | Not Available | Positive | 502342 - 504057 | 63842.8 |
| duf4923 family protein | DXC44_01995 | Not Available | Positive | 504263 - 504859 | 21273.9 |
| recombinase reca | DXC44_02000 | Not Available | Negative | 504933 - 505976 | 37366.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

