Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii toxin-antitoxin system hipa family toxin | DXC44_21160 | Not Available | Positive | 4895318 - 4896808 | 56948.5 |
| hypothetical protein | DXC44_21165 | Not Available | Positive | 4896854 - 4898050 | 47865.6 |
| hypothetical protein | DXC44_21170 | Not Available | Positive | 4898090 - 4898641 | 21464.4 |
| atp-binding protein | DXC44_21175 | Not Available | Positive | 4898625 - 4902287 | 142702.0 |
| hypothetical protein | DXC44_21180 | Not Available | Positive | 4902305 - 4903183 | 33832.3 |
| hypothetical protein | DXC44_21190 | Not Available | Positive | 4904455 - 4909386 | 191682.0 |
| duf5110 domain-containing protein | DXC44_21195 | Not Available | Negative | 4909442 - 4911895 | 93622.4 |
| glycoside hydrolase family 97 protein | DXC44_21200 | Not Available | Negative | 4912070 - 4913953 | 71882.3 |
| l-rhamnose mutarotase | DXC44_21205 | Not Available | Negative | 4914025 - 4914408 | 15537.8 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_21210 | Not Available | Negative | 4914431 - 4916119 | 64006.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

