Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent dna helicase recg | DXC44_21105 | Not Available | Negative | 4881602 - 4883059 | 54715.7 |
| rtec protein | DXC44_21110 | Not Available | Negative | 4883209 - 4883826 | 23879.9 |
| deaminase | DXC44_21115 | Not Available | Negative | 4884037 - 4884450 | 15780.2 |
| sigma-54-dependent fis family transcriptional regulator | DXC44_21120 | Not Available | Negative | 4884730 - 4886052 | 49941.4 |
| response regulator | DXC44_21125 | Not Available | Negative | 4886045 - 4888363 | 88083.5 |
| tetracycline resistance ribosomal protection protein | DXC44_21130 | Not Available | Negative | 4888363 - 4890288 | 71991.4 |
| 23s rrna (adenine(2058)-n(6))-methyltransferase erm(f) | DXC44_21135 | Not Available | Negative | 4890575 - 4891375 | 30309.3 |
| metallophosphatase | DXC44_21140 | Not Available | Positive | 4892097 - 4892609 | 19795.6 |
| hypothetical protein | DXC44_21150 | Not Available | Positive | 4893394 - 4894710 | 51399.5 |
| xre family transcriptional regulator | DXC44_21155 | Not Available | Positive | 4895001 - 4895309 | 11819.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

