Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosomal protein s6 | DXC44_21000 | Not Available | Positive | 4862109 - 4862453 | 13428.3 |
| 30s ribosomal protein s18 | DXC44_21005 | Not Available | Positive | 4862456 - 4862725 | 10561.2 |
| 50s ribosomal protein l9 | DXC44_21010 | Not Available | Positive | 4862741 - 4863184 | 16159.9 |
| hypothetical protein | DXC44_21015 | Not Available | Negative | 4863254 - 4863946 | 26978.2 |
| hypothetical protein | DXC44_21020 | Not Available | Negative | 4864101 - 4864301 | 6663.71 |
| long-chain fatty acid--coa ligase | DXC44_21025 | Not Available | Negative | 4864462 - 4866135 | 63271.5 |
| trna (n(6)-l-threonylcarbamoyladenosine(37)-c(2))- methylthiotransferase mtab | DXC44_21030 | Not Available | Positive | 4866241 - 4867557 | 49152.8 |
| glycosyltransferase family 2 protein | DXC44_21035 | Not Available | Positive | 4867593 - 4868618 | 39378.6 |
| radical sam protein | DXC44_21040 | Not Available | Positive | 4868706 - 4869587 | 33132.9 |
| dihydroneopterin aldolase | DXC44_21045 | Not Available | Negative | 4869734 - 4870102 | 13945.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

