Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyl hydrolase family 88 | DXC44_20945 | Not Available | Negative | 4851177 - 4852475 | 49836.5 |
| hypothetical protein | DXC44_20950 | Not Available | Positive | 4852891 - 4853223 | 13445.5 |
| hypothetical protein | DXC44_20955 | Not Available | Positive | 4853220 - 4853858 | 24226.5 |
| hypothetical protein | DXC44_20965 | Not Available | Negative | 4854861 - 4855046 | 7119.24 |
| coproporphyrinogen iii oxidase family protein | DXC44_20970 | Not Available | Negative | 4855080 - 4856210 | 43516.7 |
| elongation factor g | DXC44_20975 | Not Available | Positive | 4856396 - 4858555 | 80535.6 |
| sensor histidine kinase | DXC44_20980 | Not Available | Positive | 4858818 - 4860386 | 59676.4 |
| dna-binding response regulator | DXC44_20985 | Not Available | Positive | 4860388 - 4861086 | 26811.6 |
| hypothetical protein | DXC44_20990 | Not Available | Negative | 4861162 - 4861344 | 6168.02 |
| marr family transcriptional regulator | DXC44_20995 | Not Available | Negative | 4861453 - 4861899 | 17228.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

