Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sensor histidine kinase | DXC44_20895 | Not Available | Positive | 4844144 - 4845682 | 59494.4 |
| dna-binding response regulator | DXC44_20900 | Not Available | Positive | 4845687 - 4846370 | 26125.7 |
| sam-dependent methyltransferase | DXC44_20905 | Not Available | Negative | 4846367 - 4847551 | 43843.0 |
| d-alanyl-d-alanine dipeptidase | DXC44_20910 | Not Available | Negative | 4847555 - 4848220 | 25322.8 |
| transcriptional regulator | DXC44_20915 | Not Available | Negative | 4848244 - 4848591 | 13249.2 |
| thioredoxin | DXC44_20920 | Not Available | Negative | 4848629 - 4849108 | 17688.5 |
| hypothetical protein | DXC44_20925 | Not Available | Negative | 4849111 - 4849329 | 7976.9 |
| hypothetical protein | DXC44_20930 | Not Available | Negative | 4849534 - 4849782 | 9253.75 |
| hypothetical protein | DXC44_20935 | Not Available | Positive | 4849962 - 4850609 | 24488.9 |
| hypothetical protein | DXC44_20940 | Not Available | Positive | 4850622 - 4851119 | 18565.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

