Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | DXC44_20845 | Not Available | Negative | 4831245 - 4831988 | 27239.8 |
| efflux rnd transporter periplasmic adaptor subunit | DXC44_20850 | Not Available | Negative | 4832030 - 4833253 | 44062.9 |
| tolc family protein | DXC44_20855 | Not Available | Negative | 4833278 - 4834621 | 50272.4 |
| helicase | DXC44_20860 | Not Available | Positive | 4835258 - 4836508 | 48035.2 |
| butyrate kinase | DXC44_20865 | Not Available | Negative | 4836646 - 4837710 | 38268.3 |
| phosphate butyryltransferase | DXC44_20870 | Not Available | Negative | 4837723 - 4838631 | 33315.3 |
| fused gamma-glutamyl-gamma-aminobutyrate hydrolase/peptidase | DXC44_20875 | Not Available | Positive | 4838714 - 4840471 | 64886.2 |
| glutamine cyclotransferase | DXC44_20880 | Not Available | Positive | 4840540 - 4841544 | 37858.6 |
| sufe family protein | DXC44_20885 | Not Available | Positive | 4841556 - 4841984 | 16169.5 |
| tonb-dependent receptor | DXC44_20890 | Not Available | Negative | 4842020 - 4844092 | 79151.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

