Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyruvate formate lyase-activating protein | DXC44_20795 | Not Available | Positive | 4822019 - 4822747 | 28010.6 |
| hypothetical protein | DXC44_20800 | Not Available | Negative | 4822849 - 4823436 | 21700.1 |
| lactate utilization protein | DXC44_20805 | Not Available | Negative | 4823440 - 4824807 | 51567.5 |
| (fe-s)-binding protein | DXC44_20810 | Not Available | Negative | 4824804 - 4825544 | 27278.1 |
| dna-binding response regulator | DXC44_20815 | Not Available | Negative | 4825856 - 4826467 | 22691.8 |
| hemerythrin domain-containing protein | DXC44_20820 | Not Available | Negative | 4826464 - 4827159 | 27000.4 |
| tryptophan-rich sensory protein | DXC44_20825 | Not Available | Negative | 4827286 - 4827750 | 18151.9 |
| dna-binding response regulator | DXC44_20830 | Not Available | Negative | 4828035 - 4828760 | 27866.9 |
| histidine kinase | DXC44_20835 | Not Available | Negative | 4828757 - 4829812 | 40178.1 |
| abc transporter permease | DXC44_20840 | Not Available | Negative | 4830006 - 4831226 | 44142.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

