Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yjgp/yjgq family permease | DXC44_20740 | Not Available | Positive | 4809376 - 4811274 | 72529.5 |
| bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/gtp cyclohydrolase ii | DXC44_20745 | Not Available | Positive | 4811277 - 4812491 | 44935.4 |
| pyridoxal phosphate-dependent aminotransferase | DXC44_20750 | Not Available | Positive | 4812617 - 4813810 | 43095.5 |
| trna lysidine(34) synthetase tils | DXC44_20755 | Not Available | Negative | 4814041 - 4815345 | 50064.5 |
| ferrous iron transport protein b | DXC44_20760 | Not Available | Positive | 4815466 - 4817934 | 92739.5 |
| Trna-cys | Not Available | Not Available | Positive | 4818247 - 4818321 | Not Available |
| hypothetical protein | DXC44_20775 | Not Available | Positive | 4818831 - 4819022 | 7204.75 |
| Trna-ser | Not Available | Not Available | Positive | 4819001 - 4819090 | Not Available |
| Trna-glu | Not Available | Not Available | Positive | 4819443 - 4819518 | Not Available |
| formate c-acetyltransferase | DXC44_20790 | Not Available | Positive | 4819722 - 4821950 | 84089.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

