Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase | DXC44_20690 | Not Available | Negative | 4792933 - 4796358 | 130519.0 |
| alpha-glucosidase | DXC44_20695 | Not Available | Negative | 4796355 - 4798289 | 73716.6 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_20700 | Not Available | Negative | 4798441 - 4800267 | 68526.6 |
| tonb-dependent receptor | DXC44_20705 | Not Available | Negative | 4800278 - 4803355 | 113749.0 |
| rna polymerase sigma-70 factor | DXC44_20710 | Not Available | Negative | 4803481 - 4804026 | 21359.8 |
| glucuronyl hydrolase | DXC44_20715 | Not Available | Negative | 4804051 - 4805277 | 46563.7 |
| helix-turn-helix domain-containing protein | DXC44_20720 | Not Available | Negative | 4805513 - 4808317 | 106017.0 |
| Trna-met | Not Available | Not Available | Positive | 4808491 - 4808564 | Not Available |
| Trna-met | Not Available | Not Available | Positive | 4808626 - 4808702 | Not Available |
| hypothetical protein | DXC44_20735 | Not Available | Positive | 4808906 - 4809292 | 15254.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

