Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp phosphoribosyltransferase | DXC44_01905 | Not Available | Positive | 482536 - 483387 | 31336.4 |
| histidinol dehydrogenase | DXC44_01910 | Not Available | Positive | 483437 - 484717 | 46572.2 |
| histidinol-phosphate transaminase | DXC44_01915 | Not Available | Positive | 484720 - 485760 | 39610.4 |
| bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase hisb | DXC44_01920 | Not Available | Positive | 485764 - 486882 | 42221.7 |
| nad(+) synthase | DXC44_01925 | Not Available | Negative | 486972 - 488897 | 71128.6 |
| transcriptional repressor | DXC44_01930 | Not Available | Positive | 489062 - 489472 | 15560.8 |
| nadh peroxidase | DXC44_01935 | Not Available | Positive | 489550 - 490101 | 20566.4 |
| thioredoxin | DXC44_01940 | Not Available | Negative | 490205 - 490663 | 17034.9 |
| thioredoxin | DXC44_01945 | Not Available | Negative | 490667 - 490963 | 11303.9 |
| omph family outer membrane protein | DXC44_01950 | Not Available | Negative | 491082 - 491696 | 23085.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

