Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain TF05-18
Accession NumberQSSN00000000.1
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXC44_00015 | Not Available | + | 4047 - 5624 | 56712.6 |
| mannose-6-phosphate isomerase | DXC44_00020 | Not Available | + | 5738 - 6709 | 36186.5 |
| lactonase family protein | DXC44_00025 | Not Available | - | 6801 - 7967 | 42728.9 |
| Tmrna,resume consensus sequence (at 89): tttatctggcaacgaaaa | Not Available | Not Available | + | 8108 - 8502 | Not Available |
| alpha-l-fucosidase | DXC44_00035 | Not Available | - | 8683 - 10008 | 50388.9 |
| gtp-binding protein | DXC44_00040 | Not Available | + | 10157 - 11407 | 47715.0 |
| beta-xylosidase | DXC44_00050 | Not Available | - | 12027 - 14894 | 108262.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_00055 | Not Available | - | 14911 - 16629 | 64244.0 |
| hybrid sensor histidine kinase/response regulator | DXC44_00065 | Not Available | + | 19985 - 24457 | 171738.0 |
| glycoside hydrolase family 28 protein | DXC44_00070 | Not Available | - | 24535 - 25941 | 52387.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
