Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dha2 family efflux mfs transporter permease subunit | DXC44_20590 | Not Available | Negative | 4770291 - 4771667 | 49030.7 |
| methionine adenosyltransferase | DXC44_20595 | Not Available | Positive | 4771945 - 4773237 | 47598.8 |
| tigr00730 family rossman fold protein | DXC44_20600 | Not Available | Positive | 4773352 - 4773939 | 21517.4 |
| duf4271 domain-containing protein | DXC44_20605 | Not Available | Positive | 4773936 - 4774748 | 31597.2 |
| uroporphyrinogen-iii synthase | DXC44_20610 | Not Available | Positive | 4774753 - 4775502 | 28649.6 |
| ribonuclease p protein component | DXC44_20615 | Not Available | Positive | 4775605 - 4775997 | 15158.8 |
| membrane protein insertion efficiency factor yidd | DXC44_20620 | Not Available | Positive | 4775994 - 4776215 | 8364.46 |
| hydrolase tatd | DXC44_20625 | Not Available | Positive | 4776230 - 4776859 | 24010.2 |
| tyrosine--trna ligase | DXC44_20630 | Not Available | Positive | 4776939 - 4778231 | 48043.5 |
| peptidase s41 | DXC44_20635 | Not Available | Negative | 4778356 - 4781610 | 122004.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

