Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2975 domain-containing protein | DXC44_20480 | Not Available | Positive | 4749805 - 4750452 | 23980.7 |
| duf2975 domain-containing protein | DXC44_20485 | Not Available | Positive | 4750469 - 4751116 | 24229.5 |
| hypothetical protein | DXC44_20490 | Not Available | Positive | 4751127 - 4751384 | 10168.7 |
| transcriptional regulator | DXC44_20495 | Not Available | Positive | 4751388 - 4751600 | 7789.65 |
| atp-dependent rna helicase | DXC44_20500 | Not Available | Positive | 4751862 - 4753736 | 70716.0 |
| s46 family peptidase | DXC44_20505 | Not Available | Negative | 4754057 - 4756183 | 80074.8 |
| tigr00341 family protein | DXC44_20510 | Not Available | Negative | 4756188 - 4757552 | 50535.2 |
| lipopolysaccharide biosynthesis protein | DXC44_20515 | Not Available | Negative | 4757555 - 4759000 | 54344.9 |
| holliday junction branch migration dna helicase ruvb | DXC44_20520 | Not Available | Negative | 4759004 - 4760032 | 38022.6 |
| chloramphenicol acetyltransferase | DXC44_20530 | Not Available | Positive | 4761582 - 4762202 | 23606.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

