Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor | DXC44_20425 | Not Available | Positive | 4740045 - 4740623 | 22984.7 |
| transposase | DXC44_20435 | Not Available | Negative | 4742441 - 4743133 | 27255.2 |
| Trna-met | Not Available | Not Available | Positive | 4743272 - 4743348 | Not Available |
| calcium-translocating p-type atpase, pmca-type | DXC44_20445 | Not Available | Positive | 4743504 - 4746134 | 97111.8 |
| had family phosphatase | DXC44_20450 | Not Available | Positive | 4746162 - 4746776 | 24088.8 |
| bifunctional riboflavin kinase/fad synthetase | DXC44_20455 | Not Available | Positive | 4746776 - 4747696 | 35285.5 |
| hypothetical protein | DXC44_20460 | Not Available | Negative | 4747763 - 4747984 | 8512.27 |
| duf3836 domain-containing protein | DXC44_20465 | Not Available | Positive | 4748075 - 4748494 | 16015.9 |
| hypothetical protein | DXC44_20470 | Not Available | Positive | 4748494 - 4748793 | 11054.1 |
| cpbp family intramembrane metalloprotease | DXC44_20475 | Not Available | Positive | 4748966 - 4749796 | 30257.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

