Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXC44_20375 | Not Available | Positive | 4721493 - 4721711 | 7895.11 |
| hybrid sensor histidine kinase/response regulator | DXC44_20380 | Not Available | Negative | 4721793 - 4726079 | 162861.0 |
| l-rhamnose mutarotase | DXC44_20385 | Not Available | Negative | 4726160 - 4726474 | 12242.6 |
| glycoside hydrolase family 88 protein | DXC44_20390 | Not Available | Negative | 4726512 - 4727927 | 53275.8 |
| rhamnogalacturonan lyase | DXC44_20395 | Not Available | Negative | 4727940 - 4729847 | 70703.4 |
| glycoside hydrolase family 28 protein | DXC44_20400 | Not Available | Negative | 4729844 - 4731232 | 52125.8 |
| hypothetical protein | DXC44_20405 | Not Available | Negative | 4731296 - 4733647 | 89585.2 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_20410 | Not Available | Negative | 4733840 - 4735321 | 56642.1 |
| susc/raga family tonb-linked outer membrane protein | DXC44_20415 | Not Available | Negative | 4735334 - 4738660 | 124363.0 |
| duf4974 domain-containing protein | DXC44_20420 | Not Available | Negative | 4738892 - 4739908 | 39404.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

