Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXC44_20270 | Not Available | Positive | 4699691 - 4699963 | 9827.38 |
| duf4221 domain-containing protein | DXC44_20275 | Not Available | Positive | 4700087 - 4701250 | 45396.9 |
| acyl-coa thioesterase | DXC44_20285 | Not Available | Negative | 4701398 - 4701841 | 16848.2 |
| o-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase | DXC44_20290 | Not Available | Positive | 4701964 - 4703241 | 46994.8 |
| sdr family nad(p)-dependent oxidoreductase | DXC44_20295 | Not Available | Positive | 4703252 - 4703980 | 27058.2 |
| site-specific dna-methyltransferase | DXC44_20300 | Not Available | Positive | 4704267 - 4706177 | 72530.4 |
| type iii restriction-modification system endonuclease | DXC44_20305 | Not Available | Positive | 4706193 - 4709162 | 113800.0 |
| duf4252 domain-containing protein | DXC44_20310 | Not Available | Positive | 4709393 - 4709878 | 18464.7 |
| rna polymerase sigma factor | DXC44_20315 | Not Available | Positive | 4709865 - 4710377 | 20041.8 |
| hypothetical protein | DXC44_20320 | Not Available | Positive | 4710364 - 4710894 | 20186.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

