Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| efflux rnd transporter periplasmic adaptor subunit | DXC44_20145 | Not Available | Negative | 4672604 - 4673803 | 44405.6 |
| trkh family potassium uptake protein | DXC44_20150 | Not Available | Positive | 4674297 - 4675805 | 56375.6 |
| mate family efflux transporter | DXC44_20155 | Not Available | Positive | 4675931 - 4677292 | 49515.6 |
| rna pseudouridine synthase | DXC44_20160 | Not Available | Negative | 4677359 - 4678981 | 62159.9 |
| hypothetical protein | DXC44_20165 | Not Available | Negative | 4679029 - 4679343 | 12159.8 |
| hypothetical protein | DXC44_20170 | Not Available | Positive | 4679530 - 4679736 | 7809.7 |
| hypothetical protein | DXC44_20180 | Not Available | Positive | 4679947 - 4680420 | 18360.6 |
| mgmt family protein | DXC44_20185 | Not Available | Negative | 4680370 - 4680723 | 13260.9 |
| nitrous oxide-stimulated promoter family protein | DXC44_20190 | Not Available | Negative | 4680729 - 4681022 | 11961.9 |
| maoc family dehydratase | DXC44_20195 | Not Available | Positive | 4681120 - 4681584 | 17703.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

