Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamine--fructose-6-phosphate transaminase (isomerizing) | DXC44_20080 | Not Available | Positive | 4648356 - 4650200 | 67658.3 |
| amidophosphoribosyltransferase | DXC44_20085 | Not Available | Positive | 4650359 - 4652242 | 71341.8 |
| carbamoyl-phosphate synthase (glutamine-hydrolyzing) small subunit | DXC44_20090 | Not Available | Positive | 4652268 - 4653344 | 39980.6 |
| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit | DXC44_20095 | Not Available | Positive | 4653368 - 4656592 | 119638.0 |
| arylsulfatase | DXC44_20110 | Not Available | Negative | 4660189 - 4661706 | 57849.4 |
| pyruvate:ferredoxin (flavodoxin) oxidoreductase | DXC44_20120 | Not Available | Negative | 4661922 - 4665467 | 129317.0 |
| atp-binding protein | DXC44_20125 | Not Available | Negative | 4665510 - 4666688 | 46146.3 |
| hypothetical protein | DXC44_20130 | Not Available | Positive | 4666791 - 4668002 | 45582.0 |
| tolc family protein | DXC44_20135 | Not Available | Negative | 4668041 - 4669414 | 51781.2 |
| multidrug efflux rnd transporter permease subunit | DXC44_20140 | Not Available | Negative | 4669436 - 4672537 | 113115.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

