Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXC44_20030 | Not Available | Negative | 4632541 - 4632774 | 8584.44 |
| asparagine synthase b | DXC44_20035 | Not Available | Negative | 4632853 - 4634523 | 62823.6 |
| glutamate synthase subunit beta | DXC44_20040 | Not Available | Negative | 4634540 - 4635880 | 48815.7 |
| glutamate synthase large subunit | DXC44_20045 | Not Available | Negative | 4635921 - 4640399 | 164847.0 |
| diaminopimelate epimerase | DXC44_20050 | Not Available | Positive | 4640924 - 4641766 | 30311.7 |
| ll-diaminopimelate aminotransferase | DXC44_20055 | Not Available | Positive | 4641813 - 4643042 | 45919.9 |
| hypothetical protein | DXC44_20060 | Not Available | Positive | 4643161 - 4643886 | 25629.8 |
| p-ii family nitrogen regulator | DXC44_20065 | Not Available | Positive | 4644004 - 4644360 | 13455.3 |
| ammonium transporter | DXC44_20070 | Not Available | Positive | 4644436 - 4645794 | 47682.5 |
| glutamine synthetase type iii | DXC44_20075 | Not Available | Positive | 4645852 - 4648041 | 82007.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

