Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXC44_19920 | Not Available | Positive | 4614003 - 4614659 | 25861.1 |
| nudix domain-containing protein | DXC44_19925 | Not Available | Positive | 4614610 - 4615500 | 34227.0 |
| nad-dependent epimerase/dehydratase family protein | DXC44_19930 | Not Available | Positive | 4615508 - 4616350 | 31359.2 |
| m20/m25/m40 family metallo-hydrolase | DXC44_19940 | Not Available | Negative | 4616839 - 4617903 | 39122.8 |
| long-chain fatty acid--coa ligase | DXC44_19945 | Not Available | Positive | 4618117 - 4619922 | 68396.2 |
| peptide chain release factor 2 | DXC44_19950 | Not Available | Positive | 4619980 - 4621095 | 42519.2 |
| cyth domain-containing protein | DXC44_19955 | Not Available | Positive | 4621390 - 4621860 | 18287.6 |
| tonb-dependent receptor | DXC44_19960 | Not Available | Positive | 4621950 - 4624424 | 91613.6 |
| rna polymerase sigma factor | DXC44_19965 | Not Available | Positive | 4624593 - 4625096 | 19779.6 |
| hypothetical protein | DXC44_19970 | Not Available | Negative | 4625177 - 4625563 | 14818.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

