Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| porin family protein | DXC44_19870 | Not Available | Positive | 4600026 - 4600625 | 21550.2 |
| primosomal protein n' | DXC44_19875 | Not Available | Positive | 4600698 - 4603160 | 93875.1 |
| phosphatase | DXC44_19880 | Not Available | Positive | 4603208 - 4603918 | 26532.1 |
| low molecular weight phosphotyrosine protein phosphatase | DXC44_19885 | Not Available | Positive | 4603926 - 4604396 | 17874.5 |
| hdig domain-containing protein | DXC44_19890 | Not Available | Negative | 4604371 - 4606428 | 79191.8 |
| glutamate--trna ligase | DXC44_19895 | Not Available | Positive | 4606510 - 4608027 | 57905.3 |
| 3-deoxy-d-manno-octulosonic acid transferase | DXC44_19900 | Not Available | Positive | 4608040 - 4609260 | 46862.5 |
| hypothetical protein | DXC44_19905 | Not Available | Positive | 4609797 - 4609955 | 5641.7 |
| arac family transcriptional regulator | DXC44_19910 | Not Available | Positive | 4610440 - 4610928 | 18915.8 |
| hypothetical protein | DXC44_19915 | Not Available | Positive | 4611006 - 4613864 | 105417.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

