Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| agmatine deiminase family protein | DXC44_19765 | Not Available | Positive | 4581763 - 4582788 | 39316.7 |
| acyltransferase | DXC44_19770 | Not Available | Positive | 4582800 - 4583687 | 33260.4 |
| duf4251 domain-containing protein | DXC44_19775 | Not Available | Positive | 4583802 - 4584392 | 21487.3 |
| methylated-dna--[protein]-cysteine s-methyltransferase | DXC44_19780 | Not Available | Negative | 4584486 - 4585013 | 19617.8 |
| aspartate--trna(asp/asn) ligase | DXC44_19785 | Not Available | Negative | 4585188 - 4586951 | 66472.9 |
| thioredoxin | DXC44_19790 | Not Available | Negative | 4587080 - 4587376 | 11416.8 |
| duf2023 family protein | DXC44_19795 | Not Available | Negative | 4587709 - 4588053 | 13416.7 |
| flavodoxin flda | DXC44_19800 | Not Available | Negative | 4588070 - 4588573 | 17935.1 |
| porin family protein | DXC44_19805 | Not Available | Negative | 4588845 - 4589366 | 19772.5 |
| hypothetical protein | DXC44_19810 | Not Available | Negative | 4589388 - 4589909 | 21224.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

