Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXC44_19715 | Not Available | Negative | 4567562 - 4568845 | 49301.8 |
| nad(p)-dependent oxidoreductase | DXC44_19720 | Not Available | Negative | 4568838 - 4569755 | 34675.4 |
| dtdp-4-dehydrorhamnose 3,5-epimerase | DXC44_19725 | Not Available | Negative | 4569769 - 4570200 | 16064.2 |
| cdp-glucose 4,6-dehydratase | DXC44_19730 | Not Available | Negative | 4570200 - 4571300 | 41230.9 |
| glucose-1-phosphate cytidylyltransferase | DXC44_19735 | Not Available | Negative | 4571320 - 4572093 | 29520.3 |
| transcriptional regulator | DXC44_19740 | Not Available | Negative | 4572188 - 4572988 | 30523.7 |
| aminopeptidase | DXC44_19745 | Not Available | Negative | 4573486 - 4574862 | 51870.3 |
| sodium:proton antiporter | DXC44_19750 | Not Available | Negative | 4574974 - 4576425 | 51441.2 |
| hded family acid-resistance protein | DXC44_19755 | Not Available | Positive | 4576620 - 4577183 | 20986.6 |
| translocation/assembly module tamb | DXC44_19760 | Not Available | Positive | 4577248 - 4581708 | 166441.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

