Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4248 domain-containing protein | DXC44_01785 | Not Available | Negative | 460384 - 460590 | 7792.31 |
| hypothetical protein | DXC44_01790 | Not Available | Negative | 460770 - 463034 | 86575.6 |
| hypothetical protein | DXC44_01795 | Not Available | Positive | 463163 - 463609 | 16817.7 |
| glycosyltransferase | DXC44_01800 | Not Available | Positive | 463651 - 464898 | 48206.2 |
| nad-dependent epimerase/dehydratase family protein | DXC44_01805 | Not Available | Positive | 464895 - 466004 | 41521.8 |
| radical sam protein | DXC44_01810 | Not Available | Positive | 466032 - 467108 | 41102.5 |
| atp-binding protein | DXC44_01815 | Not Available | Positive | 467288 - 468508 | 46366.9 |
| rlob domain-containing protein | DXC44_01820 | Not Available | Positive | 468512 - 469147 | 24332.1 |
| glycosyltransferase | DXC44_01825 | Not Available | Positive | 469332 - 470420 | 40643.5 |
| hypothetical protein | DXC44_01830 | Not Available | Positive | 470432 - 471241 | 30809.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

