Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-binding protein | DXC44_19550 | Not Available | Negative | 4533417 - 4534178 | 28348.9 |
| nucleoid-associated protein | DXC44_19555 | Not Available | Negative | 4534181 - 4535209 | 39067.4 |
| duf3732 domain-containing protein | DXC44_19560 | Not Available | Negative | 4535209 - 4537074 | 72764.0 |
| hypothetical protein | DXC44_19565 | Not Available | Negative | 4537071 - 4537499 | 16328.0 |
| duf4297 domain-containing protein | DXC44_19570 | Not Available | Negative | 4537496 - 4538758 | 49120.9 |
| hsdr family type i site-specific deoxyribonuclease | DXC44_19575 | Not Available | Negative | 4538772 - 4542176 | 130469.0 |
| restriction endonuclease subunit s | DXC44_19580 | Not Available | Negative | 4542188 - 4543321 | 42747.6 |
| restriction endonuclease subunit m | DXC44_19585 | Not Available | Negative | 4543308 - 4544912 | 60508.1 |
| xre family transcriptional regulator | DXC44_19590 | Not Available | Negative | 4544915 - 4545127 | 7779.48 |
| hypothetical protein | DXC44_19600 | Not Available | Positive | 4545926 - 4546117 | 7293.26 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

