Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type i glyceraldehyde-3-phosphate dehydrogenase | DXC44_19395 | Not Available | Positive | 4502683 - 4503693 | 35961.1 |
| trna (adenosine(37)-n6)-dimethylallyltransferase miaa | DXC44_19400 | Not Available | Positive | 4503815 - 4504738 | 35776.3 |
| yegs/rv2252/bmru family lipid kinase | DXC44_19405 | Not Available | Positive | 4504744 - 4505673 | 35331.0 |
| 3-deoxy-8-phosphooctulonate synthase | DXC44_19410 | Not Available | Positive | 4505746 - 4506543 | 28835.3 |
| hypothetical protein | DXC44_19415 | Not Available | Positive | 4506720 - 4507038 | 12575.1 |
| glycerate kinase | DXC44_19420 | Not Available | Positive | 4507063 - 4508202 | 39757.6 |
| bifunctional fucokinase/l-fucose-1-p-guanylyltransferase | DXC44_19425 | Not Available | Negative | 4508189 - 4511029 | 105133.0 |
| nitroreductase family protein | DXC44_19430 | Not Available | Negative | 4511103 - 4511708 | 23172.8 |
| signal peptide peptidase sppa | DXC44_19435 | Not Available | Positive | 4511843 - 4513624 | 65880.9 |
| tetraacyldisaccharide 4'-kinase | DXC44_19440 | Not Available | Positive | 4513632 - 4514732 | 42254.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

