Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXC44_19185 | Not Available | Positive | 4461008 - 4461412 | 14728.4 |
| is982-like element isprsp2 family transposase | DXC44_19190 | Not Available | Negative | 4461440 - 4462414 | 37280.8 |
| is1595-like element isprsp1 family transposase | DXC44_19195 | Not Available | Negative | 4462474 - 4463358 | 34510.5 |
| hypothetical protein | DXC44_19200 | Not Available | Negative | 4463605 - 4463916 | 11808.7 |
| duf4948 domain-containing protein | DXC44_19205 | Not Available | Negative | 4463940 - 4464530 | 22664.8 |
| hypothetical protein | DXC44_19210 | Not Available | Negative | 4464601 - 4465149 | 21386.6 |
| hypothetical protein | DXC44_19215 | Not Available | Negative | 4465294 - 4466304 | 38563.1 |
| hypothetical protein | DXC44_19220 | Not Available | Negative | 4466380 - 4467075 | 27201.2 |
| integrase | DXC44_19225 | Not Available | Negative | 4467145 - 4468263 | 43776.0 |
| duf4261 domain-containing protein | DXC44_19235 | Not Available | Negative | 4469097 - 4469852 | 28320.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

