Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent 6-phosphofructokinase | DXC44_19080 | Not Available | Positive | 4442497 - 4443480 | 35513.5 |
| sodium:proton antiporter | DXC44_19085 | Not Available | Positive | 4443494 - 4445740 | 82261.9 |
| alpha-glucan family phosphorylase | DXC44_19090 | Not Available | Positive | 4445762 - 4448320 | 98124.5 |
| arginase family protein | DXC44_19095 | Not Available | Positive | 4448337 - 4449146 | 30785.6 |
| methylglyoxal synthase | DXC44_19100 | Not Available | Positive | 4449201 - 4449737 | 20470.6 |
| dna-binding protein | DXC44_19110 | Not Available | Positive | 4450550 - 4450771 | 8591.42 |
| hypothetical protein | DXC44_19115 | Not Available | Positive | 4450996 - 4451367 | 14334.6 |
| is5 family transposase | DXC44_19120 | Not Available | Positive | 4451321 - 4451785 | 17649.1 |
| dna-binding protein | DXC44_19125 | Not Available | Positive | 4451794 - 4452105 | 11696.0 |
| hypothetical protein | DXC44_19130 | Not Available | Positive | 4452519 - 4452755 | 9180.42 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

