Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXC44_18970 | Not Available | Negative | 4425745 - 4425984 | 9121.88 |
| susc/raga family tonb-linked outer membrane protein | DXC44_18975 | Not Available | Positive | 4426701 - 4429397 | 98599.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXC44_18980 | Not Available | Positive | 4429434 - 4431026 | 60955.6 |
| duf296 domain-containing protein | DXC44_18990 | Not Available | Positive | 4431499 - 4432056 | 20785.2 |
| twin-arginine translocation signal domain-containing protein | DXC44_18995 | Not Available | Positive | 4432201 - 4433355 | 42885.9 |
| alpha/beta fold hydrolase | DXC44_19000 | Not Available | Positive | 4433363 - 4434394 | 39223.8 |
| flavodoxin | DXC44_19005 | Not Available | Positive | 4434554 - 4434976 | 15689.8 |
| integrase | DXC44_19010 | Not Available | Negative | 4435062 - 4435292 | 8991.06 |
| hypothetical protein | DXC44_19015 | Not Available | Negative | 4435274 - 4435504 | 8693.62 |
| hypothetical protein | DXC44_19020 | Not Available | Negative | 4435495 - 4435788 | 11120.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

