Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding protein | DXC44_18920 | Not Available | Negative | 4416698 - 4417009 | 12121.7 |
| duf3408 domain-containing protein | DXC44_18925 | Not Available | Positive | 4417487 - 4417990 | 18852.2 |
| plasmid mobilization relaxosome protein mobc | DXC44_18930 | Not Available | Positive | 4418191 - 4418595 | 15014.6 |
| mobilization protein | DXC44_18935 | Not Available | Positive | 4418570 - 4419520 | 36132.2 |
| hypothetical protein | DXC44_18940 | Not Available | Positive | 4419550 - 4419930 | 14445.5 |
| hypothetical protein | DXC44_18945 | Not Available | Positive | 4419941 - 4420545 | 23202.9 |
| integrase | DXC44_18950 | Not Available | Positive | 4420553 - 4421479 | 35871.6 |
| arac family transcriptional regulator | DXC44_18955 | Not Available | Negative | 4421548 - 4422465 | 35378.6 |
| lactonase family protein | DXC44_18960 | Not Available | Positive | 4422745 - 4423899 | 42617.1 |
| carboxymuconolactone decarboxylase | DXC44_18965 | Not Available | Positive | 4423924 - 4425531 | 59895.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

