Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transposase family protein | DXC44_18865 | Not Available | Positive | 4410956 - 4411275 | 12466.3 |
| site-specific integrase | DXC44_18870 | Not Available | Positive | 4411355 - 4412590 | 47348.6 |
| hypothetical protein | DXC44_18880 | Not Available | Negative | 4413048 - 4413260 | 7921.67 |
| n-acetyltransferase | DXC44_18885 | Not Available | Positive | 4413270 - 4413869 | 23400.9 |
| hypothetical protein | DXC44_18890 | Not Available | Positive | 4414197 - 4414577 | 15115.5 |
| hypothetical protein | DXC44_18895 | Not Available | Negative | 4414598 - 4414789 | 7426.97 |
| sigma-70 family rna polymerase sigma factor | DXC44_18900 | Not Available | Positive | 4414815 - 4415375 | 22141.5 |
| hypothetical protein | DXC44_18905 | Not Available | Negative | 4415528 - 4415977 | 16593.2 |
| hypothetical protein | DXC44_18910 | Not Available | Negative | 4415950 - 4416135 | 6862.41 |
| dna-binding protein | DXC44_18915 | Not Available | Negative | 4416331 - 4416654 | 12499.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

