Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar abc transporter substrate-binding protein | DXC44_18815 | Not Available | Positive | 4397362 - 4398210 | 31246.1 |
| histidine--trna ligase | DXC44_18820 | Not Available | Positive | 4398369 - 4399733 | 50299.7 |
| crispr-associated helicase/endonuclease cas3 | DXC44_18825 | Not Available | Positive | 4400135 - 4402360 | 84283.9 |
| hypothetical protein | DXC44_18830 | Not Available | Positive | 4402371 - 4403231 | 33244.5 |
| type i-c crispr-associated protein cas5 | DXC44_18835 | Not Available | Positive | 4403233 - 4403913 | 26800.2 |
| type i-c crispr-associated protein cas8c/csd1 | DXC44_18840 | Not Available | Positive | 4403910 - 4405625 | 65100.2 |
| type i-c crispr-associated protein cas7/csd2 | DXC44_18845 | Not Available | Positive | 4405645 - 4406529 | 32507.9 |
| crispr-associated protein cas4 | DXC44_18850 | Not Available | Positive | 4406539 - 4407204 | 25838.0 |
| type i-c crispr-associated endonuclease cas1 | DXC44_18855 | Not Available | Positive | 4407201 - 4408223 | 38708.3 |
| crispr-associated endonuclease cas2 | DXC44_18860 | Not Available | Positive | 4408233 - 4408523 | 11015.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

