Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXC44_18765 | Not Available | Positive | 4382742 - 4383422 | 24715.3 |
| hybrid sensor histidine kinase/response regulator | DXC44_18770 | Not Available | Positive | 4383636 - 4387958 | 165130.0 |
| duf5060 domain-containing protein | DXC44_18775 | Not Available | Positive | 4388123 - 4389727 | 61856.8 |
| 3,4-dihydroxy-2-butanone-4-phosphate synthase | DXC44_18780 | Not Available | Positive | 4389849 - 4390463 | 22216.8 |
| deor/glpr transcriptional regulator | DXC44_18785 | Not Available | Positive | 4390475 - 4391230 | 27350.1 |
| transketolase | DXC44_18790 | Not Available | Positive | 4391572 - 4392417 | 31469.7 |
| transketolase family protein | DXC44_18795 | Not Available | Positive | 4392407 - 4393345 | 33639.6 |
| glycerol kinase glpk | DXC44_18800 | Not Available | Positive | 4393371 - 4394867 | 55220.4 |
| fucose isomerase | DXC44_18805 | Not Available | Positive | 4394901 - 4396325 | 52346.9 |
| multidrug dmt transporter permease | DXC44_18810 | Not Available | Positive | 4396338 - 4397354 | 35979.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

