Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ompa family protein | DXC44_18535 | Not Available | Negative | 4335606 - 4336679 | 38634.8 |
| duf3869 domain-containing protein | DXC44_18540 | Not Available | Negative | 4336735 - 4337625 | 31092.9 |
| hypothetical protein | DXC44_18545 | Not Available | Negative | 4337636 - 4338874 | 47701.3 |
| holliday junction resolvase ruvx | DXC44_18550 | Not Available | Positive | 4339080 - 4339499 | 15859.5 |
| peptide deformylase | DXC44_18555 | Not Available | Positive | 4339523 - 4340077 | 21050.7 |
| tetratricopeptide repeat protein | DXC44_18560 | Not Available | Positive | 4340150 - 4342159 | 77320.4 |
| threonine--trna ligase | DXC44_18565 | Not Available | Positive | 4342240 - 4344180 | 74203.1 |
| translation initiation factor if-3 | DXC44_18570 | Not Available | Positive | 4344296 - 4344892 | 22643.4 |
| 50s ribosomal protein l35 | DXC44_18575 | Not Available | Positive | 4344964 - 4345161 | 7367.31 |
| 50s ribosomal protein l20 | DXC44_18580 | Not Available | Positive | 4345273 - 4345623 | 13211.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

