Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamine abc transporter substrate-binding protein | DXC44_18430 | Not Available | Positive | 4309523 - 4310341 | 30961.1 |
| gfo/idh/moca family oxidoreductase | DXC44_18435 | Not Available | Positive | 4310430 - 4311419 | 36847.1 |
| duf4421 domain-containing protein | DXC44_18440 | Not Available | Positive | 4311429 - 4312556 | 43164.2 |
| site-specific integrase | DXC44_18445 | Not Available | Negative | 4312591 - 4312760 | 6539.1 |
| duf308 domain-containing protein | DXC44_18450 | Not Available | Positive | 4313546 - 4314112 | 20357.0 |
| duf4891 domain-containing protein | DXC44_18455 | Not Available | Positive | 4314123 - 4314521 | 14987.3 |
| s9 family peptidase | DXC44_18460 | Not Available | Positive | 4314610 - 4317060 | 91460.3 |
| arac family transcriptional regulator | DXC44_18465 | Not Available | Negative | 4317163 - 4318008 | 32523.8 |
| efflux rnd transporter periplasmic adaptor subunit | DXC44_18470 | Not Available | Positive | 4318172 - 4319227 | 38693.3 |
| acrb/acrd/acrf family protein | DXC44_18475 | Not Available | Positive | 4319246 - 4322293 | 112605.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

