Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribose 5-phosphate isomerase b | DXC44_18380 | Not Available | Positive | 4302162 - 4302596 | 15944.1 |
| duf4468 domain-containing protein | DXC44_18385 | Not Available | Positive | 4302703 - 4303800 | 40467.4 |
| tetratricopeptide repeat protein | DXC44_18390 | Not Available | Positive | 4304165 - 4304461 | 11531.6 |
| 4fe-4s dicluster domain-containing protein | DXC44_18395 | Not Available | Positive | 4304472 - 4304702 | 8117.04 |
| 3-methyl-2-oxobutanoate dehydrogenase subunit vorb | DXC44_18400 | Not Available | Positive | 4304714 - 4305796 | 39184.6 |
| hypothetical protein | DXC44_18405 | Not Available | Positive | 4305803 - 4305970 | 6434.4 |
| 2-oxoglutarate oxidoreductase | DXC44_18410 | Not Available | Positive | 4305989 - 4306753 | 27912.9 |
| 2-oxoglutarate ferredoxin oxidoreductase subunit gamma | DXC44_18415 | Not Available | Positive | 4306767 - 4307309 | 19888.6 |
| hypothetical protein | DXC44_18420 | Not Available | Negative | 4307303 - 4307491 | 7558.39 |
| hypothetical protein | DXC44_18425 | Not Available | Positive | 4307403 - 4309514 | 80812.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

