Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4476 domain-containing protein | DXC44_18280 | Not Available | Positive | 4278131 - 4278802 | 25490.8 |
| duf4476 domain-containing protein | DXC44_18285 | Not Available | Positive | 4278836 - 4279447 | 22934.6 |
| hypothetical protein | DXC44_18290 | Not Available | Negative | 4279517 - 4279840 | 11453.6 |
| cytidine deaminase | DXC44_18295 | Not Available | Positive | 4280060 - 4280539 | 17760.2 |
| winged helix dna-binding domain-containing protein | DXC44_18300 | Not Available | Positive | 4280536 - 4281588 | 40519.9 |
| sgnh/gdsl hydrolase family protein | DXC44_18305 | Not Available | Negative | 4281655 - 4283166 | 57365.3 |
| abc-f family atpase | DXC44_18310 | Not Available | Negative | 4283354 - 4284973 | 61289.0 |
| nucleotide exchange factor grpe | DXC44_18315 | Not Available | Positive | 4285151 - 4285771 | 23521.8 |
| molecular chaperone dnaj | DXC44_18320 | Not Available | Positive | 4285791 - 4286966 | 42201.2 |
| bifunctional folylpolyglutamate synthase/dihydrofolate synthase | DXC44_18325 | Not Available | Positive | 4287061 - 4288347 | 48045.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

