Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | DXC44_18230 | Not Available | Negative | 4268167 - 4269447 | 47780.6 |
| abc transporter permease | DXC44_18235 | Not Available | Negative | 4269487 - 4270737 | 48071.8 |
| abc transporter permease | DXC44_18240 | Not Available | Negative | 4270769 - 4272061 | 47619.7 |
| abc transporter atp-binding protein | DXC44_18245 | Not Available | Negative | 4272105 - 4272770 | 24550.0 |
| hlyd family efflux transporter periplasmic adaptor subunit | DXC44_18250 | Not Available | Negative | 4273139 - 4274386 | 46548.9 |
| lysm peptidoglycan-binding domain-containing protein | DXC44_18255 | Not Available | Negative | 4274548 - 4275444 | 35105.5 |
| hypothetical protein | DXC44_18260 | Not Available | Negative | 4275550 - 4276191 | 24603.2 |
| hypothetical protein | DXC44_18265 | Not Available | Negative | 4276347 - 4276895 | 21481.5 |
| hypothetical protein | DXC44_18270 | Not Available | Negative | 4276917 - 4277279 | 13705.4 |
| rna polymerase sigma factor | DXC44_18275 | Not Available | Negative | 4277287 - 4277823 | 21672.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

