Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXC44_18125 | Not Available | Positive | 4244536 - 4245069 | 20291.5 |
| flotillin family protein | DXC44_18130 | Not Available | Positive | 4245095 - 4246795 | 62444.3 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis enzyme mnmg | DXC44_18135 | Not Available | Positive | 4246942 - 4248813 | 69606.1 |
| adenine phosphoribosyltransferase | DXC44_18140 | Not Available | Positive | 4248873 - 4249397 | 19188.5 |
| hypothetical protein | DXC44_18145 | Not Available | Negative | 4249400 - 4249624 | 8505.38 |
| excinuclease abc subunit uvrc | DXC44_18150 | Not Available | Positive | 4249627 - 4251447 | 69888.8 |
| d-tyrosyl-trna(tyr) deacylase | DXC44_18155 | Not Available | Positive | 4251605 - 4252057 | 16476.0 |
| pyrophosphatase | DXC44_18160 | Not Available | Positive | 4252057 - 4252377 | 12338.7 |
| deoxyribose-phosphate aldolase | DXC44_18165 | Not Available | Positive | 4252384 - 4253331 | 34785.2 |
| polyprenyl synthetase family protein | DXC44_18170 | Not Available | Negative | 4253455 - 4254429 | 36285.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

