Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXC44_18075 | Not Available | Positive | 4233631 - 4233816 | 7353.07 |
| hypothetical protein | DXC44_18080 | Not Available | Negative | 4233907 - 4234386 | 18237.3 |
| hypothetical protein | DXC44_18085 | Not Available | Negative | 4234470 - 4237493 | 109980.0 |
| arac family transcriptional regulator | DXC44_18090 | Not Available | Negative | 4237538 - 4238032 | 19177.3 |
| site-specific integrase | DXC44_18095 | Not Available | Negative | 4238846 - 4239784 | 36218.7 |
| murein l,d-transpeptidase | DXC44_18100 | Not Available | Positive | 4239992 - 4241011 | 38970.9 |
| hypothetical protein | DXC44_18105 | Not Available | Positive | 4241014 - 4241811 | 29161.1 |
| hypothetical protein | DXC44_18110 | Not Available | Negative | 4241842 - 4242099 | 9707.39 |
| hypothetical protein | DXC44_18115 | Not Available | Positive | 4242616 - 4243848 | 44184.2 |
| endoribonuclease ybey | DXC44_18120 | Not Available | Positive | 4243893 - 4244309 | 15838.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

