Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fumarate reductase/succinate dehydrogenase flavoprotein subunit | DXC44_18025 | Not Available | Negative | 4219791 - 4221749 | 72651.5 |
| succinate dehydrogenase/fumarate reductase cytochrome b subunit | DXC44_18030 | Not Available | Negative | 4221784 - 4222470 | 25487.5 |
| phosphatase pap2 family protein | DXC44_18035 | Not Available | Positive | 4222661 - 4223272 | 22003.9 |
| s41 family peptidase | DXC44_18040 | Not Available | Negative | 4223376 - 4224977 | 60797.7 |
| phosphopantetheine adenylyltransferase | DXC44_18045 | Not Available | Negative | 4224980 - 4225435 | 17350.0 |
| type iia dna topoisomerase subunit b | DXC44_18050 | Not Available | Negative | 4225453 - 4227330 | 70989.7 |
| n-acetyltransferase | DXC44_18055 | Not Available | Negative | 4227361 - 4228497 | 43785.1 |
| sodium:calcium antiporter | DXC44_18060 | Not Available | Negative | 4228572 - 4229534 | 33528.8 |
| acid phosphatase | DXC44_18065 | Not Available | Negative | 4229598 - 4230569 | 37239.9 |
| tonb-dependent receptor | DXC44_18070 | Not Available | Negative | 4230580 - 4233348 | 104209.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

