Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-gly | Not Available | Not Available | Positive | 426652 - 426724 | Not Available |
| Trna-leu | Not Available | Not Available | Positive | 426772 - 426855 | Not Available |
| Trna-leu | Not Available | Not Available | Positive | 426876 - 426962 | Not Available |
| Trna-gly | Not Available | Not Available | Positive | 426976 - 427051 | Not Available |
| glutamine synthetase | DXC44_01645 | Not Available | Negative | 427172 - 428674 | 56034.0 |
| gnat family n-acetyltransferase | DXC44_01650 | Not Available | Positive | 428880 - 430412 | 59330.0 |
| pas domain-containing protein | DXC44_01655 | Not Available | Negative | 430539 - 431861 | 50256.6 |
| sigma-54-dependent fis family transcriptional regulator | DXC44_01660 | Not Available | Negative | 431867 - 433198 | 50256.9 |
| tolc family protein | DXC44_01665 | Not Available | Positive | 433530 - 434837 | 50664.0 |
| efflux rnd transporter periplasmic adaptor subunit | DXC44_01670 | Not Available | Positive | 434843 - 436093 | 47799.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

