Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXC44_17960 | Not Available | Positive | 4208400 - 4208651 | 9673.73 |
| acetyl-coa carboxylase biotin carboxylase subunit | DXC44_17965 | Not Available | Positive | 4208617 - 4208873 | 9654.86 |
| pp_03534 | DXC44_17970 | Not Available | Negative | 4209163 - 4210080 | Not Available |
| acyl-coa thioesterase | DXC44_17975 | Not Available | Positive | 4210139 - 4210546 | 15657.8 |
| dna-protecting protein dpra | DXC44_17980 | Not Available | Positive | 4210543 - 4211658 | 40940.4 |
| glycoside hydrolase family 29 | DXC44_17985 | Not Available | Negative | 4211739 - 4213622 | 70601.9 |
| duf5119 domain-containing protein | DXC44_18000 | Not Available | Positive | 4215552 - 4216547 | 36270.8 |
| fimbrillin family protein | DXC44_18005 | Not Available | Positive | 4216596 - 4217585 | 35746.3 |
| arac family transcriptional regulator | DXC44_18015 | Not Available | Positive | 4218091 - 4218951 | 33227.9 |
| succinate dehydrogenase/fumarate reductase iron-sulfur subunit | DXC44_18020 | Not Available | Negative | 4219015 - 4219770 | 27308.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

