Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyridoxal phosphate-dependent class ii aminotransferase | DXC44_17910 | Not Available | Negative | 4192545 - 4193555 | 38747.6 |
| cobyric acid synthase | DXC44_17915 | Not Available | Negative | 4193548 - 4195038 | 55380.6 |
| cob(i)yrinic acid a,c-diamide adenosyltransferase | DXC44_17920 | Not Available | Negative | 4195038 - 4195613 | 22231.8 |
| cobyrinate a,c-diamide synthase | DXC44_17925 | Not Available | Negative | 4195610 - 4196938 | 49083.6 |
| putative transporter | DXC44_17930 | Not Available | Positive | 4197174 - 4198862 | 60794.7 |
| tonb-dependent receptor | DXC44_17935 | Not Available | Positive | 4199255 - 4201432 | 81363.8 |
| tonb-dependent receptor | DXC44_17940 | Not Available | Positive | 4201804 - 4203864 | 78267.4 |
| heme-binding protein | DXC44_17945 | Not Available | Positive | 4203898 - 4205094 | 45154.6 |
| anaerobic ribonucleoside-triphosphate reductase activating protein | DXC44_17950 | Not Available | Negative | 4205144 - 4205611 | 17754.3 |
| anaerobic ribonucleoside-triphosphate reductase | DXC44_17955 | Not Available | Negative | 4205595 - 4207688 | 80551.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

