Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | DXC44_17750 | Not Available | Positive | 4160498 - 4162861 | 90324.2 |
| abc transporter atp-binding protein | DXC44_17755 | Not Available | Positive | 4162881 - 4163555 | 24839.1 |
| dmt family transporter | DXC44_17760 | Not Available | Negative | 4163882 - 4164769 | 31789.8 |
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | DXC44_17765 | Not Available | Negative | 4164857 - 4166044 | 44190.9 |
| diacylglycerol kinase family lipid kinase | DXC44_17770 | Not Available | Positive | 4166289 - 4167323 | 38141.2 |
| methyltransferase domain-containing protein | DXC44_17775 | Not Available | Negative | 4167404 - 4168108 | 26195.4 |
| endopeptidase la | DXC44_17780 | Not Available | Positive | 4168290 - 4170767 | 92607.4 |
| trna guanosine(34) transglycosylase tgt | DXC44_17785 | Not Available | Positive | 4170770 - 4171900 | 42665.6 |
| yjgp/yjgq family permease | DXC44_17790 | Not Available | Positive | 4171911 - 4173083 | 45473.9 |
| had family phosphatase | DXC44_17795 | Not Available | Negative | 4173084 - 4173704 | 23419.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

