Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain TF05-18 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1462332 bp
Thymine Count
1450009 bp
Guanine Count
1075488 bp
Cytosine Count
1073971 bp
Genome Length
5062435 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
86 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| port family protein | DXC44_17700 | Not Available | Positive | 4145393 - 4146169 | 29061.6 |
| Trna-pro | Not Available | Not Available | Positive | 4146339 - 4146413 | Not Available |
| atp-binding protein | DXC44_17710 | Not Available | Negative | 4146573 - 4147904 | 50551.9 |
| sigma-54-dependent fis family transcriptional regulator | DXC44_17715 | Not Available | Negative | 4147901 - 4149268 | 51877.1 |
| sel1 repeat family protein | DXC44_17720 | Not Available | Positive | 4149492 - 4150415 | 34904.6 |
| tolc family protein | DXC44_17725 | Not Available | Positive | 4150465 - 4151934 | 55871.3 |
| hlyd family efflux transporter periplasmic adaptor subunit | DXC44_17730 | Not Available | Positive | 4152019 - 4153269 | 48109.4 |
| abc transporter permease | DXC44_17735 | Not Available | Positive | 4153280 - 4155676 | 92748.7 |
| abc transporter permease | DXC44_17740 | Not Available | Positive | 4155690 - 4158059 | 90041.8 |
| abc transporter permease | DXC44_17745 | Not Available | Positive | 4158080 - 4160479 | 91542.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

